Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_4373256_4382067_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4373256 - 4382067

Intron Length:

8812

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAAGCCT

5'SS Class:

major

3'SS Sequence:

CTTTCTTATGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTCTTAT

U12 Branch Point Sequence:

CTTTCCCCACCT

Flanking Amino Acid:

CSSTHDFDPTGLVQRCVIIQ

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.6

0.7

69.4

41.1

Major BPS

91.4

1.03

0.7

79.9

34.9

Major PPT

84.9

0.79

0.8

80.9

29.9

Minor 5ss

32.7

-2

3.4

48.4

47.3

Minor BPS

49.6

0.05

2.2

76.94

45.3

Associated Gene:

Gene:

ARHGEF12

Ensembl Gene ID:

ENSAPLG00000014925

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000034405

4343160 - 4413370

70211