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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_4383582_4384267_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4383582 - 4384267
Intron Length:
686

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGT|GTAAGTAAA
5'SS Class:
major
3'SS Sequence:
CTTCTCCTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTCTGAA
U12 Branch Point Sequence:
TGTGTCTGAAAT
Flanking Amino Acid:
NHLEVVKLIKSGSYVALTVQ
Intron Amino Acid Position:
137

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.3
0.62
1.1
76.2
34.7
Major BPS
64.4
0.36
1.2
57.3
41.7
Major PPT
86.3
0.82
0.7
80.7
24.4
Minor 5ss
37
-1.5
2.8
43.1
43.9
Minor BPS
56.6
0.28
1.7
74.71
41.6

Associated Gene:

Gene:
ARHGEF12
Ensembl Gene ID:
ENSAPLG00000014925
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015657
4343160 - 4568695
225536
ENSAPLT00000046653
4343160 - 4485049
141890
ENSAPLT00000034405
4343160 - 4413370
70211
ENSAPLT00000023751
4343160 - 4413370
70211