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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_4386669_4387849_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4386669 - 4387849
Intron Length:
1181

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTGAGTACT
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTTCCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAGTTAC
U12 Branch Point Sequence:
TAGTAGTTACTT
Flanking Amino Acid:
PSRPNSDIADSPRSGLKERV
Intron Amino Acid Position:
308

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
1
82.6
29.4
Major BPS
63.6
0.34
1.2
55.4
41.7
Major PPT
83.7
0.76
0.7
76.8
31.9
Minor 5ss
35.4
-1.7
2.9
48.5
40.3
Minor BPS
45.1
-0.2
2.4
65.65
45.2

Associated Gene:

Gene:
ARHGEF12
Ensembl Gene ID:
ENSAPLG00000014925
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034405
4343160 - 4413370
70211
ENSAPLT00000023751
4343160 - 4413370
70211
ENSAPLT00000015657
4343160 - 4568695
225536
ENSAPLT00000046653
4343160 - 4485049
141890