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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_4387922_4388699_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4387922 - 4388699
Intron Length:
778

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTGAGTCCA
5'SS Class:
major
3'SS Sequence:
TGACTCGCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TGTTTCTGACTC
Flanking Amino Acid:
SPEKTEVQDTDSQSSVGSPS
Intron Amino Acid Position:
332

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.8
0.44
1.1
61
39.3
Major BPS
100
1.24
0.5
100
0
Major PPT
64.1
0.32
1
54.4
41.2
Minor 5ss
32
-2.1
2.9
43.6
43.3
Minor BPS
54.6
0.12
1.7
67.42
38.4

Associated Gene:

Gene:
ARHGEF12
Ensembl Gene ID:
ENSAPLG00000014925
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034405
4343160 - 4413370
70211
ENSAPLT00000023751
4343160 - 4413370
70211
ENSAPLT00000015657
4343160 - 4568695
225536
ENSAPLT00000046653
4343160 - 4485049
141890