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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_4394478_4394711_F

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4394478 - 4394711
Intron Length:
234

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTATGTCAG
5'SS Class:
major
3'SS Sequence:
TGTGTTTGTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATGTAAT
U12 Branch Point Sequence:
TCTTCCAGCAAT
Flanking Amino Acid:
RRPSRHDSSAIGRAMEMQKQ
Intron Amino Acid Position:
613

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.3
0.6
1
64.3
41.6
Major BPS
75.6
0.64
1.1
75.7
36.5
Major PPT
74.5
0.55
1
73.5
41.9
Minor 5ss
41.4
-1
2.8
49.6
41
Minor BPS
46
-0.2
2.2
71.25
45

Associated Gene:

Gene:
ARHGEF12
Ensembl Gene ID:
ENSAPLG00000014925
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015657
4343160 - 4568695
225536
ENSAPLT00000046653
4343160 - 4485049
141890
ENSAPLT00000034405
4343160 - 4413370
70211
ENSAPLT00000023751
4343160 - 4413370
70211