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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_4396478_4396734_F

Intron Information:

Intron Rank:
25
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4396478 - 4396734
Intron Length:
257

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGATGG
5'SS Class:
major
3'SS Sequence:
CCTCTCTCTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTAACAA
U12 Branch Point Sequence:
CAGTAGTTAACA
Flanking Amino Acid:
YEIKRQEVINELFYTERAHV
Intron Amino Acid Position:
791

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77
0.64
1
61.2
40.1
Major BPS
61.8
0.29
1.1
69.7
35.6
Major PPT
83.1
0.74
0.7
80.4
24.9
Minor 5ss
32
-2.1
3
35.2
43.3
Minor BPS
48.9
-0
2.2
61.27
44.6

Associated Gene:

Gene:
ARHGEF12
Ensembl Gene ID:
ENSAPLG00000014925
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015657
4343160 - 4568695
225536
ENSAPLT00000046653
4343160 - 4485049
141890
ENSAPLT00000034405
4343160 - 4413370
70211
ENSAPLT00000023751
4343160 - 4413370
70211