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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_4397727_4399377_F

Intron Information:

Intron Rank:
27
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4397727 - 4399377
Intron Length:
1651

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAACTCC
5'SS Class:
major
3'SS Sequence:
CTTTCTGGCACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAC
U12 Branch Point Sequence:
CTAATTTTGACT
Flanking Amino Acid:
DQIGEDLLSWFSGAAEEKIK
Intron Amino Acid Position:
869

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70
0.47
1.1
60
40.2
Major BPS
86.5
0.91
0.8
77.4
37.4
Major PPT
72.5
0.51
1
67.7
37.8
Minor 5ss
44
-0.6
2.9
51.5
45.3
Minor BPS
60.1
0.4
1.3
71.56
39.8

Associated Gene:

Gene:
ARHGEF12
Ensembl Gene ID:
ENSAPLG00000014925
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015657
4343160 - 4568695
225536
ENSAPLT00000046653
4343160 - 4485049
141890
ENSAPLT00000034405
4343160 - 4413370
70211
ENSAPLT00000023751
4343160 - 4413370
70211