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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_4401834_4402085_F

Intron Information:

Intron Rank:
30
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4401834 - 4402085
Intron Length:
252

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGAGGT
5'SS Class:
strong_major
3'SS Sequence:
GCATTTTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATCAA
U12 Branch Point Sequence:
TTTTGCTTATCA
Flanking Amino Acid:
QAVKESENKQHLEDYQRRLD
Intron Amino Acid Position:
983

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
69.9
41.1
Major BPS
79
0.72
1
80.3
31.7
Major PPT
82.8
0.74
0.9
80.4
36.9
Minor 5ss
30.8
-2.2
3.7
47.1
48.3
Minor BPS
67.1
0.53
2
83.19
37.9

Associated Gene:

Gene:
ARHGEF12
Ensembl Gene ID:
ENSAPLG00000014925
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015657
4343160 - 4568695
225536
ENSAPLT00000046653
4343160 - 4485049
141890
ENSAPLT00000034405
4343160 - 4413370
70211
ENSAPLT00000023751
4343160 - 4413370
70211