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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_4404809_4405667_F

Intron Information:

Intron Rank:
34
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4404809 - 4405667
Intron Length:
859

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGT|GTAAGTAAT
5'SS Class:
major
3'SS Sequence:
TATGTTTATACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTATTTGATA
Flanking Amino Acid:
LVAQTVSEKNVWQDLIAQMA
Intron Amino Acid Position:
1119

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.2
0.64
1.1
80
34.8
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
78.7
0.65
1
73.2
40.9
Minor 5ss
39.4
-1.2
2.9
52.2
44.4
Minor BPS
68.3
0.57
1.4
78.88
30.8

Associated Gene:

Gene:
ARHGEF12
Ensembl Gene ID:
ENSAPLG00000014925
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015657
4343160 - 4568695
225536
ENSAPLT00000046653
4343160 - 4485049
141890
ENSAPLT00000034405
4343160 - 4413370
70211
ENSAPLT00000023751
4343160 - 4413370
70211