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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_4405986_4406367_F

Intron Information:

Intron Rank:
36
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4405986 - 4406367
Intron Length:
382

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAACAG
5'SS Class:
major
3'SS Sequence:
TTCTATTTACTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCCAT
U12 Branch Point Sequence:
AGTTGCTTAACC
Flanking Amino Acid:
DIPASSLQSPDKDLGLDSSL
Intron Amino Acid Position:
1175

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
64.9
41
Major BPS
77.3
0.68
1.2
86.7
32.3
Major PPT
75.7
0.58
0.9
70.5
39.7
Minor 5ss
30.7
-2.2
3.1
38.3
46.6
Minor BPS
70.6
0.63
1.8
77.77
37.8

Associated Gene:

Gene:
ARHGEF12
Ensembl Gene ID:
ENSAPLG00000014925
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023751
4343160 - 4413370
70211
ENSAPLT00000015657
4343160 - 4568695
225536
ENSAPLT00000046653
4343160 - 4485049
141890
ENSAPLT00000034405
4343160 - 4413370
70211