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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_4408942_4410613_F

Intron Information:

Intron Rank:
38
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4408942 - 4410613
Intron Length:
1672

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCATA
5'SS Class:
strong_major
3'SS Sequence:
GTTCTCTTAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
GTTCTCTTAACA
Flanking Amino Acid:
EDEDVQIRISGNYLILDGYG
Intron Amino Acid Position:
1413

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.9
0.89
0.8
83.2
30.8
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
77.9
0.63
0.9
73.4
35.8
Minor 5ss
37.5
-1.4
3
48.1
47.6
Minor BPS
78.1
0.88
1.1
81.59
32.9

Associated Gene:

Gene:
ARHGEF12
Ensembl Gene ID:
ENSAPLG00000014925
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015657
4343160 - 4568695
225536
ENSAPLT00000046653
4343160 - 4485049
141890
ENSAPLT00000034405
4343160 - 4413370
70211
ENSAPLT00000023751
4343160 - 4413370
70211