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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_4410931_4411676_F

Intron Information:

Intron Rank:
39
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4410931 - 4411676
Intron Length:
746

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTGTAT
5'SS Class:
major
3'SS Sequence:
ATTTGTTGTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
TGTTTGTTCATT
Flanking Amino Acid:
KIENNLEKLKEVEEDYIILR
Intron Amino Acid Position:
1519

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.4
0.55
1
70.2
36.1
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
75.3
0.57
1
74
41
Minor 5ss
44.6
-0.6
3.2
64.1
47.4
Minor BPS
49
0.01
2.4
75.64
41.8

Associated Gene:

Gene:
ARHGEF12
Ensembl Gene ID:
ENSAPLG00000014925
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023751
4343160 - 4413370
70211
ENSAPLT00000015657
4343160 - 4568695
225536
ENSAPLT00000034405
4343160 - 4413370
70211