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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_4429417_4488895_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
4429417 - 4488895
Intron Length:
59479

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGGACC
5'SS Class:
strong_major
3'SS Sequence:
GCTCTCTCCGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTCAC
U12 Branch Point Sequence:
GGGTGCTCACGG
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
73
34.7
Major BPS
69.8
0.49
1.1
71.3
36.7
Major PPT
74.9
0.56
0.8
69
31.5
Minor 5ss
32.1
-2
3.3
43.2
44.2
Minor BPS
36.4
-1.1
2.2
36.67
45

Associated Gene:

Gene:
GRIK4
Ensembl Gene ID:
ENSAPLG00000014007
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038130
4429387 - 4588397
159011