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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_4531639_4536165_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4531639 - 4536165
Intron Length:
4527

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTCCC
5'SS Class:
strong_major
3'SS Sequence:
TTTGATCCCGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TGAGCCTAACCT
Flanking Amino Acid:
FSWPRASPGAAAILDDPMEC
Intron Amino Acid Position:
51

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
0.9
67.6
37.6
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
76.2
0.59
0.9
70.1
36.1
Minor 5ss
30.2
-2.3
2.8
34
35
Minor BPS
49
0
2.1
69.24
47.2

Associated Gene:

Gene:
GRIK4
Ensembl Gene ID:
ENSAPLG00000014007
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038046
4531488 - 4588397
56910