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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_4536331_4542232_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4536331 - 4542232
Intron Length:
5902

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTGAGTATC
5'SS Class:
major
3'SS Sequence:
CTGCTACCCACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
TCTCTGCTACCC
Flanking Amino Acid:
RDSEYETAETMCQILPKGVV
Intron Amino Acid Position:
100

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1
75.4
34.4
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
68.8
0.42
0.9
61.6
33.9
Minor 5ss
37
-1.5
2.9
51.4
39.2
Minor BPS
40.7
-0.7
2.4
55.63
42.9

Associated Gene:

Gene:
GRIK4
Ensembl Gene ID:
ENSAPLG00000014007
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014638
4535796 - 4588397
52602
ENSAPLT00000038130
4429387 - 4588397
159011
ENSAPLT00000038046
4531488 - 4588397
56910