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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_4544909_4547949_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4544909 - 4547949
Intron Length:
3041

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTCAG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTACTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
ATTTCTTTATTT
Flanking Amino Acid:
TACLICAKAECLLNLEKLLR
Intron Amino Acid Position:
188

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
70.9
40.9
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
90.6
0.91
0.7
85.1
28.5
Minor 5ss
36
-1.6
3
45.9
42.4
Minor BPS
71.8
0.76
1.5
85.98
34.4

Associated Gene:

Gene:
GRIK4
Ensembl Gene ID:
ENSAPLG00000014007
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038130
4429387 - 4588397
159011
ENSAPLT00000038046
4531488 - 4588397
56910
ENSAPLT00000014638
4535796 - 4588397
52602