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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_4563750_4564204_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4563750 - 4564204
Intron Length:
455

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGCGGG
5'SS Class:
major
3'SS Sequence:
CTCTCTTGGACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTCAC
U12 Branch Point Sequence:
CTCTCTTGGACA
Flanking Amino Acid:
GTSLMNYLRMVELEGLTGHI
Intron Amino Acid Position:
371

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.4
0.57
1
55.8
43.4
Major BPS
68.4
0.46
0.9
69.3
26.9
Major PPT
69.9
0.45
1
67.4
38
Minor 5ss
30.4
-2.2
3.3
34.5
43.8
Minor BPS
59
0.28
1.5
66.5
40.4

Associated Gene:

Gene:
GRIK4
Ensembl Gene ID:
ENSAPLG00000014007
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038130
4429387 - 4588397
159011
ENSAPLT00000038046
4531488 - 4588397
56910
ENSAPLT00000014638
4535796 - 4588397
52602