Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_4570550_4577364_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4570550 - 4577364

Intron Length:

6815

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CGG|GTAAGTGAA

5'SS Class:

strong_major

3'SS Sequence:

CCTCTCTCTCCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TCCTCAT

U12 Branch Point Sequence:

GGGTCCTCATCT

Flanking Amino Acid:

TGMVGELIARKADLAVAGLT

Intron Amino Acid Position:

510

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.7

0.86

0.9

77.6

32.8

Major BPS

82.3

0.8

0.9

81.8

30.8

Major PPT

81.3

0.7

72.7

32.1

Minor 5ss

31.6

-2.1

3.1

31.7

42.6

Minor BPS

53.6

0.19

1.9

70.16

Associated Gene:

Gene:

GRIK4

Ensembl Gene ID:

ENSAPLG00000014007

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000038130

4429387 - 4588397

159011

ENSAPLT00000038046

4531488 - 4588397

56910

ENSAPLT00000014638

4535796 - 4588397

52602