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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_4626384_4626496_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4626384 - 4626496
Intron Length:
113

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCAGAGCA
5'SS Class:
major
3'SS Sequence:
TTCTTGTCATTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GGTCCAA
U12 Branch Point Sequence:
TTTCTTGTCATT
Flanking Amino Acid:
SLDSVVRPMLSVINLTVPTQ
Intron Amino Acid Position:
1780

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
1.3
68.7
36.4
Major BPS
44.1
-0.3
1.4
50.2
45.2
Major PPT
74.3
0.55
0.9
74.7
35
Minor 5ss
26.1
-2.7
3
31.3
42.3
Minor BPS
45.8
-0.2
2.3
71.97
40.1

Associated Gene:

Gene:
TECTA
Ensembl Gene ID:
ENSAPLG00000013764
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014347
4623471 - 4642779
19309