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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_4627454_4627560_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4627454 - 4627560
Intron Length:
107

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTAAGAGAG
5'SS Class:
major
3'SS Sequence:
TCGTGCTGTTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GGATAAA
U12 Branch Point Sequence:
TTCTCGTGCTGT
Flanking Amino Acid:
GTEWIEKENCSGVVEDPCAG
Intron Amino Acid Position:
1621

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.7
0.44
1.1
59.3
39.8
Major BPS
48.3
-0.1
1.3
50
42.2
Major PPT
67.7
0.4
1
65.6
41
Minor 5ss
32.7
-2
3.5
48.2
47.3
Minor BPS
29
-1.5
3.8
59.91
49.3

Associated Gene:

Gene:
TECTA
Ensembl Gene ID:
ENSAPLG00000013764
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014347
4623471 - 4642779
19309