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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_4627842_4627922_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4627842 - 4627922
Intron Length:
81

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGCAT
5'SS Class:
strong_major
3'SS Sequence:
CCGGTGCCCGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGCACAT
U12 Branch Point Sequence:
TCCCCCGCGACG
Flanking Amino Acid:
QSWKTNGMQKSCNELQYSQY
Intron Amino Acid Position:
1527

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.9
74.7
37
Major BPS
53.7
0.09
1.1
60.7
37.6
Major PPT
61.4
0.26
0.9
53.6
36.7
Minor 5ss
27
-2.6
3.3
37.6
47.1
Minor BPS
42.8
-0.7
2.2
48.1
45.5

Associated Gene:

Gene:
TECTA
Ensembl Gene ID:
ENSAPLG00000013764
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014347
4623471 - 4642779
19309