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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_4637303_4637583_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4637303 - 4637583
Intron Length:
281

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGCC
5'SS Class:
strong_major
3'SS Sequence:
TGTGTTCCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TTTCATGCAATG
Flanking Amino Acid:
LPKGSFGKAKVDDLVVSLPI
Intron Amino Acid Position:
267

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.1
0.95
0.8
76
31.7
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
80.2
0.68
0.9
74
36.8
Minor 5ss
31.7
-2.1
3.3
42.5
44.5
Minor BPS
42.1
-0.7
2.2
53.82
41.6

Associated Gene:

Gene:
TECTA
Ensembl Gene ID:
ENSAPLG00000013764
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014347
4623471 - 4642779
19309