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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_4662102_4663182_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4662102 - 4663182
Intron Length:
1081

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGCACG
5'SS Class:
major
3'SS Sequence:
TTCCCCTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTGAT
U12 Branch Point Sequence:
AGGTGCTGATAC
Flanking Amino Acid:
TVHTILQELPDLEELFLCLN
Intron Amino Acid Position:
111

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69
0.45
1.1
60
44.9
Major BPS
76.2
0.65
1.1
65.3
43.7
Major PPT
85.4
0.8
0.7
80.2
25.1
Minor 5ss
41
-1
2.8
46.8
42.3
Minor BPS
41
-0.7
2
47.86
41.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013944
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014527
4654011 - 4669072
15062
ENSAPLT00000037180
4653011 - 4672466
19456
ENSAPLT00000030542
4653011 - 4674546
21536