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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_4668087_4668922_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
4668087 - 4668922
Intron Length:
836

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGAGCC
5'SS Class:
strong_major
3'SS Sequence:
TCTGTTTGTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTGAT
U12 Branch Point Sequence:
TCTGTTTGTACA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
1
69.2
36.8
Major BPS
79
0.72
1
69
38.9
Major PPT
80.3
0.68
0.9
75.5
38.3
Minor 5ss
30.3
-2.3
3.5
42
45
Minor BPS
46.5
-0.2
1.8
58.59
41.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013944
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014527
4654011 - 4669072
15062