Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_4744744_4745472_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

4744744 - 4745472

Intron Length:

729

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GTG|GTGAGCAGT

5'SS Class:

major

3'SS Sequence:

CTGTCCTCATCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATGACAC

U12 Branch Point Sequence:

CTGTCCTCATCA

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.4

0.67

70.5

41.3

Major BPS

49.5

-0

1.2

58.5

38.2

Major PPT

72.2

0.5

0.9

70.8

34.7

Minor 5ss

35.8

-1.6

45.5

44.6

Minor BPS

55.8

0.18

1.9

67.38

45.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000013286

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000013915

4743765 - 4755774

12010

ENSAPLT00000019102

4743765 - 4755344

11580