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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_4747764_4748337_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4747764 - 4748337
Intron Length:
574

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACACCAC
5'SS Class:
major
3'SS Sequence:
GACTCTTGTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTGAA
U12 Branch Point Sequence:
TATTCCTGACTG
Flanking Amino Acid:
STSCVYNVYYRTVGESIWKV
Intron Amino Acid Position:
65

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.7
0.44
1.1
56.7
42.6
Major BPS
69.6
0.49
1
59.5
39
Major PPT
70.8
0.47
1
65
40.9
Minor 5ss
36.4
-1.5
3.3
50.1
46.4
Minor BPS
57.4
0.09
1.8
65.53
42.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013286
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013915
4743765 - 4755774
12010
ENSAPLT00000019102
4743765 - 4755344
11580