Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_4751480_4752112_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4751480 - 4752112

Intron Length:

633

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAATTTA

5'SS Class:

strong_major

3'SS Sequence:

TCCTCTTGCTCAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGCAAAT

U12 Branch Point Sequence:

CCTCACCTAACA

Flanking Amino Acid:

TIEGEKSIQKVANLTAQTPY

Intron Amino Acid Position:

279

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.8

0.91

0.8

86.5

23.8

Major BPS

62.1

0.3

1.2

67.3

37.8

Major PPT

76.3

0.59

0.9

75.7

32.8

Minor 5ss

43.1

-0.8

2.9

58.1

46.5

Minor BPS

49.6

-0

1.9

62.64

43.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000013286

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000019102

4743765 - 4755344

11580

ENSAPLT00000013915

4743765 - 4755774

12010