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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_48303_48780_R

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
48303 - 48780
Intron Length:
478

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACTGGA
5'SS Class:
strong_major
3'SS Sequence:
TGTTTCCGAAAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TACTAAC
U12 Branch Point Sequence:
TGATCTCTGACT
Flanking Amino Acid:
LEWKDGKKFQGLYKCDERFG
Intron Amino Acid Position:
91

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.74
1.1
72.4
39.5
Major BPS
76.8
0.67
0.9
75.9
25
Major PPT
59
0.2
1.2
61.1
39.4
Minor 5ss
37.6
-1.4
3.2
49.9
46.3
Minor BPS
60.7
0.42
1.7
77.62
38.5

Associated Gene:

Gene:
ANKMY1
Ensembl Gene ID:
ENSAPLG00000013399
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013963
6941 - 53344
46404