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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_4865497_4869408_F

Intron Information:

Intron Rank:
140122
Intron Class:
major
Intron Phase:
Intron Coordinates:
4865497 - 4869408
Intron Length:
3912

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCGGAGGG
5'SS Class:
major
3'SS Sequence:
GTTGCATTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTGAA
U12 Branch Point Sequence:
AAAACCCCACCG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.5
0.32
1.4
51.7
45.7
Major BPS
74.8
0.62
1
67
39.8
Major PPT
76.4
0.59
1
66.2
44.3
Minor 5ss
23.8
-3
3.2
29.8
43.1
Minor BPS
39.7
-0.9
2
42.37
41.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025357
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028165
4864249 - 4869902
5654