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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_489498_490678_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
489498 - 490678
Intron Length:
1181

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTGAGGGTA
5'SS Class:
major
3'SS Sequence:
ACCTCCTGAGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTCAA
U12 Branch Point Sequence:
ACCTCCTGAGCA
Flanking Amino Acid:
MGHPRREQGRFTH
Intron Amino Acid Position:
4

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.9
0.59
1
71.2
34
Major BPS
77.9
0.69
0.8
77.9
25.8
Major PPT
62.9
0.29
1
58.5
36.4
Minor 5ss
29.8
-2.3
3.7
41.8
45.3
Minor BPS
54
0.12
1.7
62.62
43.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016989
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021439
489249 - 490687
1439