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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_4931560_4946302_R

Intron Information:

Intron Rank:
131361
Intron Class:
major
Intron Phase:
Intron Coordinates:
4931560 - 4946302
Intron Length:
14743

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTCTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATCCAT
U12 Branch Point Sequence:
ATATCCATAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
0.9
79.3
31.1
Major BPS
69.5
0.49
1.2
78.7
34.9
Major PPT
89.2
0.88
0.7
81.2
36.5
Minor 5ss
29.2
-2.4
2.5
25
36.8
Minor BPS
65.5
0.57
1.7
82.34
37.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017880
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033028
4929038 - 4950648
21611