About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_4946365_4950264_R

Intron Information:

Intron Rank:
131362
Intron Class:
major
Intron Phase:
Intron Coordinates:
4946365 - 4950264
Intron Length:
3900

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGGGTCAG
5'SS Class:
major
3'SS Sequence:
TTCTACTCTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGCTAAT
U12 Branch Point Sequence:
TCTTCTTCTACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.6
0.51
1
57.6
43
Major BPS
70.5
0.51
1.1
69.7
35.5
Major PPT
82.8
0.74
0.8
76.6
31.8
Minor 5ss
26.9
-2.7
3
28
37.7
Minor BPS
60.1
0.4
1.9
80.12
42

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017880
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033028
4929038 - 4950648
21611