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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_4982185_5005398_R

Intron Information:

Intron Rank:
129234
Intron Class:
major
Intron Phase:
Intron Coordinates:
4982185 - 5005398
Intron Length:
23214

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGTTC
5'SS Class:
strong_major
3'SS Sequence:
TTCTCCCATGTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
TTGAGTTTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
83
30.4
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
75
0.56
0.8
70.6
29.3
Minor 5ss
41.3
-1
3.3
58.3
46.6
Minor BPS
59.3
0.37
1.8
75.99
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016728
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022467
4982167 - 5008815
26649