Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_502433_502768_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

502433 - 502768

Intron Length:

336

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAATGCTG

5'SS Class:

major

3'SS Sequence:

TTTTTGCTCACAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AGCATAT

U12 Branch Point Sequence:

TTTTTGCTCACA

Flanking Amino Acid:

TSYSLPESIQSLKCRRCAVV

Intron Amino Acid Position:

167

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.2

0.66

66.2

44.9

Major BPS

50.2

0.01

1.1

46.7

38.6

Major PPT

85.4

0.8

80.1

Minor 5ss

34.4

-1.8

3.4

47.3

48.1

Minor BPS

45.9

-0.3

2.6

71.21

41.3

Associated Gene:

Gene:

ST3GAL4

Ensembl Gene ID:

ENSAPLG00000002517

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000021971

488423 - 504314

15892

ENSAPLT00000002553

488423 - 504314

15892