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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_5055615_5058277_R

Intron Information:

Intron Rank:
149737
Intron Class:
major
Intron Phase:
Intron Coordinates:
5055615 - 5058277
Intron Length:
2663

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTGGGTGGG
5'SS Class:
major
3'SS Sequence:
TATTGCCTCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TAGCAATTAATG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
62.3
0.29
1.3
54
45.2
Major BPS
83
0.82
0.8
82
24.9
Major PPT
71.4
0.48
0.9
62.8
39.3
Minor 5ss
26.6
-2.7
3.2
29.3
36.8
Minor BPS
47.7
-0.3
1.8
52.64
41.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028095
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035137
5044185 - 5058521
14337