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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_5082927_5122665_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5082927 - 5122665
Intron Length:
39739

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGC|GTAAGTGGC
5'SS Class:
major
3'SS Sequence:
GCTTTCTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTGAAAT
U12 Branch Point Sequence:
CCAGCTGAAATA
Flanking Amino Acid:
LLSMGFPKARAQKALASTGG
Intron Amino Acid Position:
54

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.9
0.42
1.4
62
44
Major BPS
54.8
0.12
1.3
62.7
40.5
Major PPT
86.9
0.83
0.7
84.4
30.5
Minor 5ss
34
-1.8
3.2
39
39.8
Minor BPS
38.9
-0.8
2.1
42.35
40.5

Associated Gene:

Gene:
UBASH3B
Ensembl Gene ID:
ENSAPLG00000011138
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011612
5082766 - 5143660
60895