About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_5122720_5123329_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5122720 - 5123329
Intron Length:
610

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTTGGTATG
5'SS Class:
major
3'SS Sequence:
TTCTCCCCCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAC
U12 Branch Point Sequence:
GTCCATCTAACA
Flanking Amino Acid:
GGRSVQAACDWLFSHVGDPF
Intron Amino Acid Position:
72

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.4
0.41
1.2
66.5
44.4
Major BPS
75.8
0.64
0.9
75.6
25.3
Major PPT
79.8
0.67
0.7
77.5
24.4
Minor 5ss
34.5
-1.8
2.9
40.3
39.8
Minor BPS
47.6
-0.1
1.8
59.45
39.9

Associated Gene:

Gene:
UBASH3B
Ensembl Gene ID:
ENSAPLG00000011138
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011612
5082766 - 5143660
60895