Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_5126624_5128691_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5126624 - 5128691

Intron Length:

2068

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTACACTTC

5'SS Class:

major

3'SS Sequence:

GTTTCTCCCCCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTTTCAT

U12 Branch Point Sequence:

CTTTCATTCATT

Flanking Amino Acid:

SRDIRFVNHETLQVIYPYTP

Intron Amino Acid Position:

258

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

71.8

0.51

1.1

66.7

40.1

Major BPS

87.6

0.93

0.9

89.3

Major PPT

78.4

0.64

0.8

70.1

36.5

Minor 5ss

46.7

-0.3

3.2

67.5

43.9

Minor BPS

0.36

2.1

80.74

41.5

Associated Gene:

Gene:

UBASH3B

Ensembl Gene ID:

ENSAPLG00000011138

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000011612

5082766 - 5143660

60895