Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_5134522_5134931_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5134522 - 5134931

Intron Length:

410

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAGGAACC

5'SS Class:

strong_major

3'SS Sequence:

ATTTCTCTTCCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTTTTAC

U12 Branch Point Sequence:

CATCCTGTCATT

Flanking Amino Acid:

PLTIICQNMQPLRISSQPGP

Intron Amino Acid Position:

373

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.8

0.75

72.5

37.3

Major BPS

74.2

0.6

39.4

Major PPT

86.3

0.82

0.8

77.9

35.9

Minor 5ss

33.3

-1.9

3.1

43.9

43.5

Minor BPS

43.5

-0.4

2.3

61.67

Associated Gene:

Gene:

UBASH3B

Ensembl Gene ID:

ENSAPLG00000011138

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000011612

5082766 - 5143660

60895