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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_5137930_5138585_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5137930 - 5138585
Intron Length:
656

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGACC
5'SS Class:
strong_major
3'SS Sequence:
CTCCCTCCTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGTCAC
U12 Branch Point Sequence:
GATGCTGTCACT
Flanking Amino Acid:
CVQTAHNILKGMQQENNLKI
Intron Amino Acid Position:
485

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.3
0.95
0.8
79.6
33.9
Major BPS
62.6
0.31
1.2
66.7
39.9
Major PPT
78
0.63
0.7
69.1
31.5
Minor 5ss
33.5
-1.9
3.1
43.7
43.7
Minor BPS
44.5
-0.3
2.4
65.17
45.5

Associated Gene:

Gene:
UBASH3B
Ensembl Gene ID:
ENSAPLG00000011138
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011612
5082766 - 5143660
60895