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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_5138731_5141275_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5138731 - 5141275
Intron Length:
2545

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGCAGAA
5'SS Class:
major
3'SS Sequence:
TTTCTGCTCGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTCAT
U12 Branch Point Sequence:
TTCTCCTCATTT
Flanking Amino Acid:
AATLSVDTTYRPHIPVSKLV
Intron Amino Acid Position:
533

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.9
0.42
1.2
62.2
38.7
Major BPS
82.3
0.8
0.9
81.8
30.8
Major PPT
81.9
0.72
0.8
76.8
31.8
Minor 5ss
33.9
-1.8
3.6
46.4
48.9
Minor BPS
61.2
0.43
1.8
79.99
42.5

Associated Gene:

Gene:
UBASH3B
Ensembl Gene ID:
ENSAPLG00000011138
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011612
5082766 - 5143660
60895