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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_513903_516668_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
513903 - 516668
Intron Length:
2766

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
CCTCTCTGCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTAAC
U12 Branch Point Sequence:
GTCTCCCTCTCT
Flanking Amino Acid:
VAFCCARSQRNLKGVVSAKN
Intron Amino Acid Position:
527

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.9
79
35.3
Major BPS
69.5
0.49
1
71.3
30.3
Major PPT
71.7
0.49
0.9
64.3
36.6
Minor 5ss
38
-1.4
3.3
49.5
41.1
Minor BPS
38.4
-0.8
3.7
69.25
47.2

Associated Gene:

Gene:
KIRREL3
Ensembl Gene ID:
ENSAPLG00000002775
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045988
506331 - 613669
107339
ENSAPLT00000045217
506331 - 755761
249431
ENSAPLT00000030204
506331 - 755834
249504
ENSAPLT00000002848
506331 - 590542
84212