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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_513903_520726_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
513903 - 520726
Intron Length:
6824

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGCATC
5'SS Class:
major
3'SS Sequence:
CCTCTCTGCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTAAC
U12 Branch Point Sequence:
GTCTCCCTCTCT
Flanking Amino Acid:
DTEIIRLKEQDLKGVVSAKN
Intron Amino Acid Position:
502

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
1
72.2
39.5
Major BPS
69.5
0.49
1
71.3
30.3
Major PPT
71.7
0.49
0.9
64.3
36.6
Minor 5ss
37.1
-1.5
3.3
50.7
46.2
Minor BPS
38.4
-0.8
3.7
69.25
47.2

Associated Gene:

Gene:
KIRREL3
Ensembl Gene ID:
ENSAPLG00000002775
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017930
506331 - 755761
249431