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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_5155805_5156031_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5155805 - 5156031
Intron Length:
227

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTTCC
5'SS Class:
strong_major
3'SS Sequence:
CTTCTTGCTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTGAT
U12 Branch Point Sequence:
GTTACTACAACT
Flanking Amino Acid:
KVKTTTVEVLAAPSKPVLEA
Intron Amino Acid Position:
117

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
75.8
35
Major BPS
74.7
0.61
0.9
63.4
35.6
Major PPT
81.9
0.72
0.8
76.6
32
Minor 5ss
41
-1
2.7
45.9
42.3
Minor BPS
51.9
0.14
1.9
75.21
40.9

Associated Gene:

Gene:
CRTAM
Ensembl Gene ID:
ENSAPLG00000010895
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011360
5149869 - 5163810
13942