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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_5158887_5159474_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5158887 - 5159474
Intron Length:
588

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTGCAG
5'SS Class:
major
3'SS Sequence:
TTGTTTTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTGAA
U12 Branch Point Sequence:
GTGCTCTGAAAG
Flanking Amino Acid:
PFRFEDLPGTVTNTYPASTA
Intron Amino Acid Position:
218

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.3
0.41
1.1
53.5
45
Major BPS
69.8
0.49
1
61
37.5
Major PPT
92.9
0.97
0.7
92.3
26.6
Minor 5ss
29.1
-2.4
3.4
38.3
46.7
Minor BPS
48.3
-0.2
1.6
51.82
42

Associated Gene:

Gene:
CRTAM
Ensembl Gene ID:
ENSAPLG00000010895
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011360
5149869 - 5163810
13942