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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_5159772_5159992_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5159772 - 5159992
Intron Length:
221

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATGAGTT
5'SS Class:
major
3'SS Sequence:
GATTTTCCTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
TGATGTTTATCT
Flanking Amino Acid:
NFSPSYPQHNDSDQPSIPSA
Intron Amino Acid Position:
264

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
1
73.4
35.5
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
75.6
0.58
0.9
67.1
40.1
Minor 5ss
42.6
-0.8
3.5
61.2
44.7
Minor BPS
52.8
0.17
2
73.3
43.6

Associated Gene:

Gene:
CRTAM
Ensembl Gene ID:
ENSAPLG00000010895
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011360
5149869 - 5163810
13942