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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_5161515_5161917_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5161515 - 5161917
Intron Length:
403

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGCTCT
5'SS Class:
strong_major
3'SS Sequence:
GCCTCTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAA
U12 Branch Point Sequence:
TCTTTAACAACA
Flanking Amino Acid:
NITQISIITFEQDLLSEGIQ
Intron Amino Acid Position:
359

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.74
1
72.7
39.4
Major BPS
74.7
0.61
1
65.9
40.9
Major PPT
80.6
0.69
0.8
72
37.9
Minor 5ss
47
-0.3
2.8
66.9
43.9
Minor BPS
47.4
-0.2
2
65.53
40.6

Associated Gene:

Gene:
CRTAM
Ensembl Gene ID:
ENSAPLG00000010895
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011360
5149869 - 5163810
13942