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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_5162409_5162900_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5162409 - 5162900
Intron Length:
492

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAAAGT
5'SS Class:
strong_major
3'SS Sequence:
ATTTATCTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
CTTTCAGTAATA
Flanking Amino Acid:
ESPGHEKNEQAVNQKSNVQY
Intron Amino Acid Position:
435

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
77.9
36.7
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
83.3
0.75
0.8
74.3
40.5
Minor 5ss
34.5
-1.8
3.1
49.5
46.3
Minor BPS
53.2
0.1
2.3
72.1
40.4

Associated Gene:

Gene:
CRTAM
Ensembl Gene ID:
ENSAPLG00000010895
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011360
5149869 - 5163810
13942