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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_5165944_5168260_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5165944 - 5168260
Intron Length:
2317

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGCAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTAAATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
GTTTTTTTAAAT
Flanking Amino Acid:
NGTREKESNGREQQPVDKYF
Intron Amino Acid Position:
129

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.8
0.94
0.9
78.6
37.2
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
79.4
0.66
0.9
78.4
33.9
Minor 5ss
32.4
-2
3.4
46.7
48.6
Minor BPS
73.7
0.82
1.3
85.52
34.2

Associated Gene:

Gene:
JHY
Ensembl Gene ID:
ENSAPLG00000010814
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011257
5165526 - 5182048
16523