Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_516777_519829_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

516777 - 519829

Intron Length:

3053

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTACGGAAA

5'SS Class:

strong_major

3'SS Sequence:

CTTCCTCTTGCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GCTTCAG

U12 Branch Point Sequence:

ACAGCTTCAGCC

Flanking Amino Acid:

EMKSGAGIQAESVPMAVIIG

Intron Amino Acid Position:

491

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.9

0.75

75.1

36.6

Major BPS

48.3

-0.1

1.7

59.3

47.1

Major PPT

85.9

0.81

0.7

80.4

24.8

Minor 5ss

30.5

-2.2

3.3

39.1

46.3

Minor BPS

44.6

-0.4

1.8

49.52

Associated Gene:

Gene:

KIRREL3

Ensembl Gene ID:

ENSAPLG00000002775

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000045988

506331 - 613669

107339

ENSAPLT00000030204

506331 - 755834

249504

ENSAPLT00000002848

506331 - 590542

84212